Aquifex, an exiting bacterium, which unexciting BioSample data. |
A segfault and NaN driven series of disconnected ideas, analyses and just plain silly posts about computational biochemistry, synthetic biology and microbiology.
Sunday, 17 January 2016
Uncultured bacterial majority? Digitally unannotated majority of the minority is worse
Saturday, 16 January 2016
The contagious ORF annotation error of 16S rRNA
Some time back in many genomes there were a few copies of a small hypothetical open reading frame, sometimes annotated as a quinone oxidase. These organisms also had less 16S rRNA than 23S rRNA. This is not some curious observation about enzyme evolution of a duo of a promiscuous ribozymatic activity of 23S rRNA and small protein that could lead to a Nature paper, though. In reality it is a sequence annotation error that seems quite viral in NCBI.
Subscribe to:
Posts (Atom)