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Tuesday, 18 September 2018

Python website on a shoestring budget, a tutorial

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If you have a Python script you want to make into a website yet want to do it for a cheap as possible, it may seem like an impossible caus...

Everything you wanted to know about isopeptide bonds in Rosetta, but were too afraid to ask

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Rosetta is great at predicting (with some accuracy) the energies of variant proteins, however, to make the most out of it with proteins wit...
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Saturday, 25 August 2018

PCR distribution

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The distribution of mutations in an error prone library has been modelled in Sun (1995) based on the underlying principle of a PCR reaction....
Sunday, 12 August 2018

Protein dropcaps

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T o make a webpage stylish does not mean that it cannot be biochemically themed. In fact, to can have both thanks to protein dropcaps! using...
Saturday, 4 August 2018

A fully suicidal enzyme follows a second order equation

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That a fully suicidal enzyme follows a second order equation is a rather intuitive statement, but it is nice to have formal proof, which is...
Monday, 19 March 2018

The curious case of fluorescein and implicit waters

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I recently was asked a straightforward task: get the energy scores of a given protein by itself, conjugated with fluorescein maleimide and i...
Sunday, 18 March 2018

GFP is technically a suicide enzyme

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GFP has an oxygen dependent maturation step to form its cofactor. Therefore, it could be farcically considered a suicide enzyme... It perfor...