tag:blogger.com,1999:blog-9015174234871442237.post9084052717399650306..comments2024-03-17T00:33:08.666-07:00Comments on The art of blowing up protein: Tweaking AlphaFold2 models with PyRosettaMatteo Ferlahttp://www.blogger.com/profile/04090452288769979595noreply@blogger.comBlogger1125tag:blogger.com,1999:blog-9015174234871442237.post-59741482287047753902022-02-09T04:42:49.861-08:002022-02-09T04:42:49.861-08:00Hi, there.
I'm a newbie to pyrosetta and strug...Hi, there.<br />I'm a newbie to pyrosetta and struggling to learn pyrosetta. I found your blog when I goggled 'pyrosetta'. May I ask you a question? I cannot find answer...<br />I want to use 'MPIJobDistributor' to utilize my multiple cpu. But I cannot find the information how to use this function.<br /><br />In detail, I tried to replace 'PyJobDistributor' with 'MPIJobDistributor' refering to the pyrosetta tutorial (https://nbviewer.org/github/RosettaCommons/PyRosetta.notebooks/blob/master/notebooks/07.02-Docking-Moves-in-Rosetta.ipynb).<br />I tried the following: 'jd = MPIJobDistributor("output", 10, scorefxn_low)', or'jd = MPIJobDistributor(10, socrefxn_low)' It read "name 'logger' is not defined". Then I tried 'pyrosetta.mpi.mpi_init(10)', but it didn't work...<br />Could you give some help about it..?<br />Any advices would be greatly appreciated.Anonymoushttps://www.blogger.com/profile/07079857301582859645noreply@blogger.com